Transcript structure and domain display: a customizable transcript visualization tool
نویسندگان
چکیده
منابع مشابه
Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence
Wheat biologists face particular problems because of the lack of genomic sequence and the three homoeologous genomes which give rise to three very similar forms for many transcripts. However, over 1.3 million available public-domain Triticeae ESTs (of which approximately 850,000 are wheat) and the full rice genomic sequence can be used to estimate likely transcript sequences present in any whea...
متن کاملrQuant.web: a tool for RNA-Seq-based transcript quantitation
We provide a novel web service, called rQuant.web, allowing convenient access to tools for quantitative analysis of RNA sequencing data. The underlying quantitation technique rQuant is based on quadratic programming and estimates different biases induced by library preparation, sequencing and read mapping. It can tackle multiple transcripts per gene locus and is therefore particularly well suit...
متن کاملNatural Antisense Transcript: A Concomitant Engagement with Protein-Coding Transcript
The vertebrate genome contains large spans of non-coding RNA, which for the most part were considered of little functional value to the organism. Recent studies have indicated that vertebrate genomes may have stored hidden secrets in this large span of non-coding RNA, which we refer to here as "Natural Antisense Transcripts (NATs)." NATs can be found in introns, exons, promoters, enhancers, int...
متن کاملTranscript Mapping
The sequence of the 1173 nt 12S kinetoplast ribosomal RHA from TiPJ sfimarpa tarentolae was determined from the maxicircle DNA sequence, and the 5* and 3' ends localized by primer runoff and SI nuclease protection experiments. The gene was shown to be free of introns by SI nuclease analysis. A partial secondary structure model of the 12S RHA molecule is presented which is equivalent in certain ...
متن کاملSATRAT: Staphylococcus aureus transcript regulatory network analysis tool
Staphylococcus aureus is a commensal organism that primarily colonizes the nose of healthy individuals. S. aureus causes a spectrum of infections that range from skin and soft-tissue infections to fatal invasive diseases. S. aureus uses a large number of virulence factors that are regulated in a coordinated fashion. The complex regulatory mechanisms have been investigated in numerous high-throu...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2016
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btw095